Top 11 JavaScript Bioinformatic Projects

MultiQC

5 1,163 9.7 JavaScript

Aggregate results from bioinformatics analyses across many samples into a single report.

Project mention: R pipelines for bulk RNA-seq analyses | /r/bioinformatics | 2023-12-09

fastp + multiQC + Salmon + DESeq2 all some nextflow workflow. It is a good exercise (not complicated) to create the pipeline from scratch the first time to properly understand each tool.

react-plotly.js

1 990 0.0 JavaScript

A plotly.js React component from Plotly 📈
SurveyJS

surveyjs.io sponsored

Open-Source JSON Form Builder to Create Dynamic Forms Right in Your App. With SurveyJS form UI libraries, you can build and style forms in a fully-integrated drag & drop form builder, render them in your JS app, and store form submission data in any backend, inc. PHP, ASP.NET Core, and Node.js.
react-cytoscapejs

1 449 0.0 JavaScript

React component for Cytoscape.js network visualisations

Project mention: Graphing a mind map / binary tree | /r/reactnative | 2023-06-11

Maybe look into Cytoscape.js... There's a react wrapper component: https://github.com/plotly/react-cytoscapejs

PostGUI

2 424 0.0 JavaScript

A React web application to query and share any PostgreSQL database.
open-cravat

1 106 8.4 JavaScript

A modular annotation tool for genomic variants
aioli

3 99 5.6 JavaScript

Framework for building fast genomics web tools with WebAssembly and WebWorkers

Project mention: Interactive Examples for Learning Jq | news.ycombinator.com | 2023-11-07

I am using https://github.com/biowasm/aioli which provides a already compiled wasm jq along with all the related support code for calling it

empress

1 44 10.0 JavaScript

A fast and scalable phylogenetic tree viewer for microbiome data analysis (by biocore)
InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
codex

3 25 6.9 JavaScript

A minimal genetic data explorer that processes all genetic information locally. (by brandonsaldan)

Project mention: Show HN: GeneCodex – A free and open source genetic varient viewer | news.ycombinator.com | 2023-05-26

Hi everyone!
I'm thrilled to announce and introduce GeneCodex, the trailblazing project that unveils the untapped power of your genetic information.
With GeneCodex, we bring you a groundbreaking approach to personalized insights. By processing your genetic data directly in your browser and leveraging the extensive SNPedia database, we empower you with a wealth of valuable information about your unique DNA.
Discover the genetic variants associated with susceptible health conditions, uncover fascinating insights into appearance traits, delve into the secrets of your personality, and so much more.
GeneCodex is, and will always be free to use. Your DNA files are processed locally, in-browser, and are not saved or sent outside of your computer. All of this, combined with an easy to use user interface provides you with the opportunity to learn more about yourself than you've ever thought to be possible.
GeneCodex is also entirely open source for maximum transparency: https://github.com/brandonsaldan/codex
Our mission is to provide you with a user-friendly platform that enables you to explore the hidden secrets of your genes. Join us on this incredible journey of self-discovery and unlock a new level of understanding about yourself.
Try out GeneCodex for yourself if you have raw DNA from AncestryDNA, 23andMe, or FamilyTreeDNA! https://codex-brandonsaldan.vercel.app/
We welcome your input! Don't hesitate to share your comments, questions, or suggestions down below! ⤵

biomultitool

1 2 4.8 JavaScript

GUI for a few tools
payless.health

1 1 9.1 JavaScript

Payless Health
Metadbgwas

3 0 5.7 JavaScript

Beginig of the expansion of DBGWAS to a metagenomic scale.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).