graphlan
taxopedia
| graphlan | taxopedia | |
|---|---|---|
| 1 | 4 | |
| 92 | 7 | |
| - | - | |
| 3.0 | 0.0 | |
| 6 months ago | about 3 years ago | |
| Python | Python | |
| MIT License | MIT License |
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graphlan
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How would one code a graphic, chronogramatic display, of a timeline in concentric circles, instead of linear parallels? Alternately, a spiral, with "phase" giving "day and month"?
In fact, the more I think about it, the more I can see diagrams that it would make some amount of sense to wrap around in circles, flowing from a "core" to an "outside". Exergy diagrams, for example (Sankey, but wrapped around). Certain hierarchies/dendograms, we do talk a lot about "the inner circle" and the "center of power" as much as "the top rung" (this is commonly done with taxonomies, I understand). Growth phases, accident fallouts... but those are basically timelines too.
taxopedia
What are some alternatives?
kneaddata - Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
python-mini-projects - A collection of simple python mini projects to enhance your python skills
ielex-data-and-tree - Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).
pyCircos - python Circos
Wikipedia-API - Python wrapper for Wikipedia
phylophlan - Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Wikipedia-Article-Scraper - A complete Python text analytics package that allows users to search for a Wikipedia article, scrape it, conduct basic text analytics and integrate it to a data pipeline without writing excessive code.
biobakery_workflows - bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.