taxopedia VS kraken-biom

Compare taxopedia vs kraken-biom and see what are their differences.

kraken-biom

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken). (by smdabdoub)
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com
featured
taxopedia kraken-biom
4 1
7 47
- -
0.0 0.0
almost 3 years ago over 2 years ago
Python Python
MIT License MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

taxopedia

Posts with mentions or reviews of taxopedia. We have used some of these posts to build our list of alternatives and similar projects.

kraken-biom

Posts with mentions or reviews of kraken-biom. We have used some of these posts to build our list of alternatives and similar projects.
  • Differences between read based abundancy estimation programs? (metagenomics)
    1 project | /r/bioinformatics | 7 Feb 2022
    The issue is that after performing a taxonomic classification using kraken2, I want to create abundance tables regarding this taxonomic classification outputs. Some people have recommended me to use kraken--biom (https://github.com/smdabdoub/kraken-biom) and some others recommended me to use bracken (https://ccb.jhu.edu/software/bracken/index.shtml?t=manual).

What are some alternatives?

When comparing taxopedia and kraken-biom you can also consider the following projects:

graphlan - High-quality circular representations of taxonomic and phylogenetic trees

GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

ielex-data-and-tree - Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

Wikipedia-API - Python wrapper for Wikipedia

atlas - ATLAS - Three commands to start analyzing your metagenome data

Wikipedia-Article-Scraper - A complete Python text analytics package that allows users to search for a Wikipedia article, scrape it, conduct basic text analytics and integrate it to a data pipeline without writing excessive code.

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

drep - Rapid comparison and dereplication of genomes

GraphBin2 - ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

Metabuli - Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com
featured

Did you konow that Python is
the 1st most popular programming language
based on number of metions?