sarek VS galaxy

Compare sarek vs galaxy and see what are their differences.

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing (by nf-core)
nextflow Workflow Pipeline Bioinformatics Genomics cancer next-generation-sequencing Conda reproducible-research Containers germline somatic variant-calling nf-core gatk4 Annotation whole-genome-sequencing whole-exome-sequencing pre-processing target-panels
Source Code
nf-co.re
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galaxy

Data intensive science for everyone. (by galaxyproject)
Bioinformatics Workflow Genomics Science sequencing ngs Dna usegalaxy Pipeline Workflow engine HacktoberFest
Source Code
galaxyproject.org
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sarek galaxy
5 4
340 1,315
2.6% 1.4%
9.9 10.0
3 days ago 3 days ago
Nextflow Python
MIT License GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

sarek

Posts with mentions or reviews of sarek. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-03-11.

galaxy

Posts with mentions or reviews of galaxy. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-17.

What are some alternatives?

When comparing sarek and galaxy you can also consider the following projects:

GATK - Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices

nextflow - A DSL for data-driven computational pipelines

rnaseq-nf - A proof of concept of RNAseq pipeline

Biopython - Official git repository for Biopython (originally converted from CVS)

mag - Assembly and binning of metagenomes

deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

configs - Config files used to define parameters specific to compute environments at different Institutions

fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

rnatoy - A proof of concept RNA-Seq pipeline with Nextflow

galaxy_ng - Ansible Galaxy Server - Issues on https://forum.ansible.com Docs on https://galaxy-ng.readthedocs.io/

patterns - A curated collection of Nextflow implementation patterns

ncbi-genome-download - Scripts to download genomes from the NCBI FTP servers

sarek vs GATK galaxy vs nextflow sarek vs rnaseq-nf galaxy vs Biopython sarek vs mag galaxy vs deepvariant sarek vs configs galaxy vs fastp sarek vs rnatoy galaxy vs galaxy_ng sarek vs patterns galaxy vs ncbi-genome-download