Top 6 Python sequencing Projects

deepvariant

5 3,076 9.1 Python

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Project mention: Look over my purchase, is there anything I should return? | /r/buildapc | 2023-05-06

galaxy

4 1,313 10.0 Python

Data intensive science for everyone.

Project mention: Need for GUIs for bioinformatic tools? | /r/bioinformatics | 2023-06-17

Maybe it would help you to look at the galaxy project: GitHub main site

WorkOS

workos.com sponsored

The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
hgvs

1 231 8.3 Python

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
ariba

1 152 3.0 Python

Antimicrobial Resistance Identification By Assembly
covid-19-signal

1 30 5.5 Python

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
16SMaRT

3 7 0.0 Python

16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).