Python ngs

Open-source Python projects categorized as ngs
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Bioinformatics Dna Science Python Genomics
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Top 4 Python ng Projects

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  1. deepvariant

    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  2. InfluxDB

    InfluxDB – Built for High-Performance Time Series Workloads. InfluxDB 3 OSS is now GA. Transform, enrich, and act on time series data directly in the database. Automate critical tasks and eliminate the need to move data externally. Download now.

    InfluxDB logo

  3. galaxy

    Data intensive science for everyone.

  4. bioconvert

    Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

  5. pairtools

    Extract 3D contacts (.pairs) from sequencing alignments

    Project mention: A Comprehensive Guide to Installing Pairtools | dev.to | 2025-03-28

    GitHub Codespace: Access to a Codespace for your pairtools repository (e.g., forked from open2c/pairtools).

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

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Index

What are some of the best open-source ng projects in Python? This list will help you:

# Project Stars
1 deepvariant 3,446
2 galaxy 1,529
3 bioconvert 376
4 pairtools 113

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InfluxDB 3 OSS is now GA. Transform, enrich, and act on time series data directly in the database. Automate critical tasks and eliminate the need to move data externally. Download now.
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