sarek
chipseq
Our great sponsors
sarek | chipseq | |
---|---|---|
5 | 1 | |
333 | 171 | |
4.2% | 5.8% | |
9.8 | 0.0 | |
5 days ago | about 2 months ago | |
Nextflow | Nextflow | |
MIT License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
sarek
- Recommendations for software or online resources
- Best somatic variant callers?
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GATK4 automated pipelines in existence?
The sarek pipeline from nf-core might interest you
- Workflow Question
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aws batch keeps the "Desired vCPUs" high long after they should be reduced
The issue is specific to https://github.com/nf-core/sarek and/or it's usage of https://www.nextflow.io/
chipseq
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Nextflow issue
Launching https://github.com/nf-core/chipseq [pensive_euler] DSL2 - revision: 51eba00b32 [master]
What are some alternatives?
GATK - Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline
galaxy - Data intensive science for everyone.
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
rnaseq-nf - A proof of concept of RNAseq pipeline
hlatyping - Precision HLA typing from next-generation sequencing data
mag - Assembly and binning of metagenomes
atacseq - ATAC-seq peak-calling and QC analysis pipeline
rnatoy - A proof of concept RNA-Seq pipeline with Nextflow
configs - Config files used to define parameters specific to compute environments at different Institutions
chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake