chipseq VS chipseq-smk-pipeline

Compare chipseq vs chipseq-smk-pipeline and see what are their differences.

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline. (by nf-core)
nf-core nextflow Workflow chip-seq chromatin-immunoprecipitation peak-calling Chip Pipeline macs2
Source Code
nf-co.re
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chipseq-smk-pipeline

ChIP-Seq processing pipeline on snakemake (by JetBrains-Research)
atac-seq chip-seq peak-calling Pipeline quality-control Snakemake Visualization
Source Code
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chipseq chipseq-smk-pipeline
1 2
172 3
2.9% -
0.0 6.3
2 months ago 2 days ago
Nextflow Python
MIT License -
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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chipseq

Posts with mentions or reviews of chipseq. We have used some of these posts to build our list of alternatives and similar projects.
  • Nextflow issue
    1 project | /r/bioinformatics | 30 Nov 2022
    Launching https://github.com/nf-core/chipseq [pensive_euler] DSL2 - revision: 51eba00b32 [master]

chipseq-smk-pipeline

Posts with mentions or reviews of chipseq-smk-pipeline. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-09-21.

What are some alternatives?

When comparing chipseq and chipseq-smk-pipeline you can also consider the following projects:

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

atlas - ATLAS - Three commands to start analyzing your metagenome data

sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Pipeliner - An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

hlatyping - Precision HLA typing from next-generation sequencing data

tech-debt - Technical debt happens when low code quality slows new developments : you have to pay time interests. TechDebt allows you to quantify and track your technical debt.

eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline

atacseq - ATAC-seq peak-calling and QC analysis pipeline

mag - Assembly and binning of metagenomes

patterns - A curated collection of Nextflow implementation patterns

chipseq vs rnaseq chipseq-smk-pipeline vs atlas chipseq vs sarek chipseq-smk-pipeline vs Pipeliner chipseq vs hlatyping chipseq-smk-pipeline vs tech-debt chipseq vs eager chipseq vs atacseq chipseq vs mag chipseq vs patterns