chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline. (by nf-core)
atacseq
ATAC-seq peak-calling and QC analysis pipeline (by nf-core)
| chipseq | atacseq | |
|---|---|---|
| 1 | 2 | |
| 171 | 160 | |
| 2.9% | 1.9% | |
| 0.0 | 7.0 | |
| 2 months ago | 20 days ago | |
| Nextflow | Nextflow | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
chipseq
Posts with mentions or reviews of chipseq.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Nextflow issue
Launching https://github.com/nf-core/chipseq [pensive_euler] DSL2 - revision: 51eba00b32 [master]
atacseq
Posts with mentions or reviews of atacseq.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-02-25.
What are some alternatives?
When comparing chipseq and atacseq you can also consider the following projects:
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Pipeliner - An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
atac-seq-pipeline - ENCODE ATAC-seq pipeline
hlatyping - Precision HLA typing from next-generation sequencing data
methylclock - DNA methylation-based clocks
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline
chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake
AltumAge
mag - Assembly and binning of metagenomes