chipseq
sarek
| chipseq | sarek | |
|---|---|---|
| 1 | 5 | |
| 172 | 338 | |
| 2.9% | 2.1% | |
| 0.0 | 9.9 | |
| 2 months ago | 2 days ago | |
| Nextflow | Nextflow | |
| MIT License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
chipseq
-
Nextflow issue
Launching https://github.com/nf-core/chipseq [pensive_euler] DSL2 - revision: 51eba00b32 [master]
sarek
- Recommendations for software or online resources
- Best somatic variant callers?
-
GATK4 automated pipelines in existence?
The sarek pipeline from nf-core might interest you
- Workflow Question
-
aws batch keeps the "Desired vCPUs" high long after they should be reduced
The issue is specific to https://github.com/nf-core/sarek and/or it's usage of https://www.nextflow.io/
What are some alternatives?
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
GATK - Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices
hlatyping - Precision HLA typing from next-generation sequencing data
galaxy - Data intensive science for everyone.
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline
rnaseq-nf - A proof of concept of RNAseq pipeline
chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake
mag - Assembly and binning of metagenomes
atacseq - ATAC-seq peak-calling and QC analysis pipeline
rnatoy - A proof of concept RNA-Seq pipeline with Nextflow
configs - Config files used to define parameters specific to compute environments at different Institutions