chipseq VS eager

Compare chipseq vs eager and see what are their differences.

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline. (by nf-core)
nf-core nextflow Workflow chip-seq chromatin-immunoprecipitation peak-calling Chip Pipeline macs2
Source Code
nf-co.re
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eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline (by nf-core)
nextflow ancientdna adna Pipeline pathogen-genomics population-genetics nf-core Workflow metagenomics Bioinformatics Genome ancient-dna-analysis
Source Code
nf-co.re
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chipseq eager
1 1
172 124
2.9% 1.6%
0.0 7.6
2 months ago 7 days ago
Nextflow Nextflow
MIT License MIT License
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chipseq

Posts with mentions or reviews of chipseq. We have used some of these posts to build our list of alternatives and similar projects.
  • Nextflow issue
    1 project | /r/bioinformatics | 30 Nov 2022
    Launching https://github.com/nf-core/chipseq [pensive_euler] DSL2 - revision: 51eba00b32 [master]

eager

Posts with mentions or reviews of eager. We have used some of these posts to build our list of alternatives and similar projects.
  • Generate consensus FASTA files pipeline
    1 project | /r/ngs | 14 Jul 2021
    So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)

What are some alternatives?

When comparing chipseq and eager you can also consider the following projects:

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

SqueezeMeta - A complete pipeline for metagenomic analysis

sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

mag - Assembly and binning of metagenomes

hlatyping - Precision HLA typing from next-generation sequencing data

chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake

masurca

atacseq - ATAC-seq peak-calling and QC analysis pipeline

patterns - A curated collection of Nextflow implementation patterns

configs - Config files used to define parameters specific to compute environments at different Institutions

chipseq vs rnaseq eager vs SqueezeMeta chipseq vs sarek eager vs mag chipseq vs hlatyping eager vs sarek chipseq vs chipseq-smk-pipeline eager vs masurca chipseq vs atacseq eager vs patterns chipseq vs mag eager vs configs