rnatoy
A proof of concept RNA-Seq pipeline with Nextflow (by nextflow-io)
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline (by nf-core)
| rnatoy | eager | |
|---|---|---|
| 1 | 1 | |
| 28 | 124 | |
| - | 1.6% | |
| 0.0 | 7.6 | |
| over 3 years ago | about 19 hours ago | |
| Nextflow | Nextflow | |
| - | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
rnatoy
Posts with mentions or reviews of rnatoy.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Nextflow RNA-seq pipeline
While running the https://github.com/nextflow-io/rnatoy/blob/master/main.nf pipeline, it throws me an error at line 64 : No such variable: genome. I have tried googling this error but I haven't found anything helpful so far.
eager
Posts with mentions or reviews of eager.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Generate consensus FASTA files pipeline
So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)
What are some alternatives?
When comparing rnatoy and eager you can also consider the following projects:
rnaseq-nf - A proof of concept of RNAseq pipeline
SqueezeMeta - A complete pipeline for metagenomic analysis
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
mag - Assembly and binning of metagenomes
configs - Config files used to define parameters specific to compute environments at different Institutions
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
masurca
patterns - A curated collection of Nextflow implementation patterns