rnaseq-nf
mag
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| rnaseq-nf | mag | |
|---|---|---|
| 1 | 2 | |
| 62 | 182 | |
| - | 4.4% | |
| 5.8 | 9.5 | |
| 14 days ago | 7 days ago | |
| Nextflow | Nextflow | |
| Mozilla Public License 2.0 | MIT License |
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
rnaseq-nf
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Snakemake vs. nf vs. CWL
For example look at: https://github.com/nextflow-io/rnaseq-nf/blob/master/nextflow.config#L39
mag
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How do you use Termux?
So, I'm a bioinformatician, and currently I am extending my company's data processing pipeline which takes metagenomic sequencing data and performs a number of downstream analyses on it, the results of which are then provided to our customers. Here is an example of such a data processing pipeline: it's a script which orchestrates the execution of a number of tools to get the desired end result. Each of the green bubbles in the flowchart represents a single program which needs to be called specific settings and with data provided to it either by me (as the pipeline input) or from outputs of previous steps in the pipeline.
- Is it possible to assemble a complete bacterial genome using short reads?
What are some alternatives?
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
SqueezeMeta - A complete pipeline for metagenomic analysis
rnatoy - A proof of concept RNA-Seq pipeline with Nextflow
atlas - Manage your database schema as code
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
patterns - A curated collection of Nextflow implementation patterns
spades - SPAdes Genome Assembler
rare-disease-wf - (WIP) best-practices workflow for rare disease
nextflow - A DSL for data-driven computational pipelines
eager - A fully reproducible and state-of-the-art ancient DNA analysis pipeline