mag
Assembly and binning of metagenomes (by nf-core)
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline (by nf-core)
Our great sponsors
| mag | eager | |
|---|---|---|
| 2 | 1 | |
| 182 | 124 | |
| 4.4% | 4.0% | |
| 9.5 | 7.6 | |
| 7 days ago | 4 days ago | |
| Nextflow | Nextflow | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
mag
Posts with mentions or reviews of mag.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-07-16.
-
How do you use Termux?
So, I'm a bioinformatician, and currently I am extending my company's data processing pipeline which takes metagenomic sequencing data and performs a number of downstream analyses on it, the results of which are then provided to our customers. Here is an example of such a data processing pipeline: it's a script which orchestrates the execution of a number of tools to get the desired end result. Each of the green bubbles in the flowchart represents a single program which needs to be called specific settings and with data provided to it either by me (as the pipeline input) or from outputs of previous steps in the pipeline.
- Is it possible to assemble a complete bacterial genome using short reads?
eager
Posts with mentions or reviews of eager.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Generate consensus FASTA files pipeline
So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)
What are some alternatives?
When comparing mag and eager you can also consider the following projects:
SqueezeMeta - A complete pipeline for metagenomic analysis
atlas - Manage your database schema as code
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
masurca
spades - SPAdes Genome Assembler
patterns - A curated collection of Nextflow implementation patterns
nextflow - A DSL for data-driven computational pipelines
configs - Config files used to define parameters specific to compute environments at different Institutions