galaxy
ariba
| galaxy | ariba | |
|---|---|---|
| 4 | 1 | |
| 1,319 | 154 | |
| 1.7% | 1.9% | |
| 10.0 | 3.0 | |
| 3 days ago | 7 months ago | |
| Python | Python | |
| GNU General Public License v3.0 or later | GNU General Public License v3.0 or later |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
galaxy
-
Need for GUIs for bioinformatic tools?
Maybe it would help you to look at the galaxy project: GitHub main site
- BIOINFORMATICS PROJECT
- Any bioinfo open source projects looking for contributors?
- Developed a new kind of dual extruder system on fully custom built 3D printer
ariba
What are some alternatives?
nextflow - A DSL for data-driven computational pipelines
abricate - :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
Biopython - Official git repository for Biopython (originally converted from CVS)
MGEfinder - A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
abritamr - A pipeline for running AMRfinderPlus and collating results into functional classes
fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
edgecase - A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
16SMaRT - 16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).
galaxy_ng - Ansible Galaxy Server - Issues on https://forum.ansible.com Docs on https://galaxy-ng.readthedocs.io/
hgvs - Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`