Python bioinformatics-pipeline

Open-source Python projects categorized as bioinformatics-pipeline
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Topics: Bioinformatics Genomics Research global-health Snakemake
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Top 4 Python bioinformatics-pipeline Projects

  • pysradb

    Package for fetching metadata and downloading data from SRA/ENA/GEO

  • ariba

    Antimicrobial Resistance Identification By Assembly

  • InfluxDB

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  • edgecase

    A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

  • GermlineMutationCalling

    An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python bioinformatics-pipeline related posts

Index

What are some of the best open-source bioinformatics-pipeline projects in Python? This list will help you:

Project Stars
1 pysradb 297
2 ariba 155
3 edgecase 14
4 GermlineMutationCalling 12

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