Predicting Antimicrobial Resistance in a Sequence

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics
antimicrobial-resistance-genes virulence-genes contigs bioinformatics-tool genomic-regions

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  • MGEfinder

    A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

    • To identify MGE’s you could try: https://github.com/bhattlab/MGEfinder

  • abritamr

    A pipeline for running AMRfinderPlus and collating results into functional classes

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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  • ariba

    Antimicrobial Resistance Identification By Assembly

  • abricate

    :mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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