eager VS chipseq

Compare eager vs chipseq and see what are their differences.

eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline (by nf-core)
nextflow ancientdna adna Pipeline pathogen-genomics population-genetics nf-core Workflow metagenomics Bioinformatics Genome ancient-dna-analysis
Source Code
nf-co.re
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chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline. (by nf-core)
nf-core nextflow Workflow chip-seq chromatin-immunoprecipitation peak-calling Chip Pipeline macs2
Source Code
nf-co.re
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eager chipseq
1 1
124 172
1.6% 2.9%
7.6 0.0
10 days ago 2 months ago
Nextflow Nextflow
MIT License MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

eager

Posts with mentions or reviews of eager. We have used some of these posts to build our list of alternatives and similar projects.
  • Generate consensus FASTA files pipeline
    1 project | /r/ngs | 14 Jul 2021
    So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)

chipseq

Posts with mentions or reviews of chipseq. We have used some of these posts to build our list of alternatives and similar projects.
  • Nextflow issue
    1 project | /r/bioinformatics | 30 Nov 2022
    Launching https://github.com/nf-core/chipseq [pensive_euler] DSL2 - revision: 51eba00b32 [master]

What are some alternatives?

When comparing eager and chipseq you can also consider the following projects:

SqueezeMeta - A complete pipeline for metagenomic analysis

rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

mag - Assembly and binning of metagenomes

sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

hlatyping - Precision HLA typing from next-generation sequencing data

masurca

chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake

patterns - A curated collection of Nextflow implementation patterns

atacseq - ATAC-seq peak-calling and QC analysis pipeline

configs - Config files used to define parameters specific to compute environments at different Institutions

eager vs SqueezeMeta chipseq vs rnaseq eager vs mag chipseq vs sarek eager vs sarek chipseq vs hlatyping eager vs masurca chipseq vs chipseq-smk-pipeline eager vs patterns chipseq vs atacseq eager vs configs chipseq vs mag