eager
atacseq
eager | atacseq | |
---|---|---|
1 | 2 | |
124 | 160 | |
1.6% | 1.9% | |
7.6 | 7.0 | |
10 days ago | 20 days ago | |
Nextflow | Nextflow | |
MIT License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
eager
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Generate consensus FASTA files pipeline
So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)
atacseq
What are some alternatives?
SqueezeMeta - A complete pipeline for metagenomic analysis
Pipeliner - An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
mag - Assembly and binning of metagenomes
atac-seq-pipeline - ENCODE ATAC-seq pipeline
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
methylclock - DNA methylation-based clocks
masurca
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
patterns - A curated collection of Nextflow implementation patterns
AltumAge
configs - Config files used to define parameters specific to compute environments at different Institutions