chipseq
eager
chipseq | eager | |
---|---|---|
1 | 1 | |
172 | 124 | |
3.5% | 1.6% | |
0.0 | 7.6 | |
2 months ago | 8 days ago | |
Nextflow | Nextflow | |
MIT License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
chipseq
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Nextflow issue
Launching https://github.com/nf-core/chipseq [pensive_euler] DSL2 - revision: 51eba00b32 [master]
eager
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Generate consensus FASTA files pipeline
So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)
What are some alternatives?
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
SqueezeMeta - A complete pipeline for metagenomic analysis
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
mag - Assembly and binning of metagenomes
hlatyping - Precision HLA typing from next-generation sequencing data
chipseq-smk-pipeline - ChIP-Seq processing pipeline on snakemake
masurca
atacseq - ATAC-seq peak-calling and QC analysis pipeline
patterns - A curated collection of Nextflow implementation patterns
configs - Config files used to define parameters specific to compute environments at different Institutions