COVID-19-RNA-Seq-datasets VS TPMCalculator

Compare COVID-19-RNA-Seq-datasets vs TPMCalculator and see what are their differences.

COVID-19-RNA-Seq-datasets

A repository for sharing information on available COVID-19 RNA-Seq datasets (by urmi-21)
covid-19 covid19-data Coronavirus rna-seq sars-cov-2 single-cell rna-seq-datasets
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TPMCalculator

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files (by ncbi)
ngs rna-seq Tpm
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COVID-19-RNA-Seq-datasets TPMCalculator
3 1
75 122
- 0.0%
3.8 0.0
about 2 years ago about 1 year ago
Python C++
MIT License GNU General Public License v3.0 or later
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COVID-19-RNA-Seq-datasets

Posts with mentions or reviews of COVID-19-RNA-Seq-datasets. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-10-30.

TPMCalculator

Posts with mentions or reviews of TPMCalculator. We have used some of these posts to build our list of alternatives and similar projects.
  • Standards for Comparing ChIP-seq and RNA-seq Data
    1 project | /r/bioinformatics | 6 Sep 2021
    For RNA-Seq I would recommend use TPM to normalize data, you can use TPMCalculator to get TPM from BAM files. Also, salmon is very good tool to get TPM, which don't require mapping. For ATAC-Seq data, I don't have much experience but deepTools can help to normalize data.

What are some alternatives?

When comparing COVID-19-RNA-Seq-datasets and TPMCalculator you can also consider the following projects:

RNA-seq-analysis - RNAseq analysis notes from Ming Tang

Win11SysCheck - Windows 11 compability check with user friendly output

covid-19 - Novel Coronavirus 2019 time series data on cases

rnaseqc - Fast, efficient RNA-Seq metrics for quality control and process optimization

cellSNP - Pileup biallelic SNPs from single-cell and bulk RNA-seq data

fastp - An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

covid-19-data - Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data

ngsLD - Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework

scaredi-pi - Simple COVID-19 Ambient Reminder E-Ink Display for Pi

rnaseq - RNA-seq analyses.

COVID-19-RNA-Seq-datasets vs RNA-seq-analysis TPMCalculator vs Win11SysCheck COVID-19-RNA-Seq-datasets vs covid-19 TPMCalculator vs rnaseqc COVID-19-RNA-Seq-datasets vs cellSNP TPMCalculator vs fastp COVID-19-RNA-Seq-datasets vs covid-19-data TPMCalculator vs ngsLD COVID-19-RNA-Seq-datasets vs scaredi-pi TPMCalculator vs rnaseq