C++ rna-seq

Open-source C++ projects categorized as rna-seq
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Topics: rnaseq Bioinformatics single-cell-rna-seq Tpm single-cell
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Top 4 C++ rna-seq Projects

  • salmon

    🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment (by COMBINE-lab)

  • rnaseqc

    Fast, efficient RNA-Seq metrics for quality control and process optimization

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo

  • TPMCalculator

    TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

  • popscle

    A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

C++ rna-seq related posts

  • Tools for strand direction detection RNA-Seq

    2 projects | /r/bioinformatics | 8 Oct 2022

  • Genotype single cell data?

    2 projects | /r/bioinformatics | 20 Mar 2022

  • Standards for Comparing ChIP-seq and RNA-seq Data

    1 project | /r/bioinformatics | 6 Sep 2021

Index

What are some of the best open-source rna-seq projects in C++? This list will help you:

Project Stars
1 salmon 734
2 rnaseqc 140
3 TPMCalculator 122
4 popscle 43

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