TPMCalculator Alternatives
Similar projects and alternatives to TPMCalculator based on common topics and language
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COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better TPMCalculator alternative or higher similarity.
TPMCalculator reviews and mentions
Posts with mentions or reviews of TPMCalculator.
We have used some of these posts to build our list of alternatives
and similar projects.
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Standards for Comparing ChIP-seq and RNA-seq Data
For RNA-Seq I would recommend use TPM to normalize data, you can use TPMCalculator to get TPM from BAM files. Also, salmon is very good tool to get TPM, which don't require mapping. For ATAC-Seq data, I don't have much experience but deepTools can help to normalize data.
Stats
Basic TPMCalculator repo stats
1
122
0.0
about 1 year ago
ncbi/TPMCalculator is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.
The primary programming language of TPMCalculator is C++.
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