C++ ngs

Open-source C++ projects categorized as ngs
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Topics: Quality Filtering Filter Trimming Bioinformatics
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Top 3 C++ ng Projects

  • fastp

    An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

    • Project mention: R pipelines for bulk RNA-seq analyses | /r/bioinformatics | 2023-12-09

    fastp + multiQC + Salmon + DESeq2 all some nextflow workflow. It is a good exercise (not complicated) to create the pipeline from scratch the first time to properly understand each tool.

  • TPMCalculator

    TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo

  • ngsLD

    Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

C++ ngs related posts

  • Standards for Comparing ChIP-seq and RNA-seq Data

    1 project | /r/bioinformatics | 6 Sep 2021

Index

What are some of the best open-source ng projects in C++? This list will help you:

Project Stars
1 fastp 1,775
2 TPMCalculator 122
3 ngsLD 37

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