Tools for strand direction detection RNA-Seq

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics
rnaseq rna-seq Bioinformatics

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  • rnaseqc

    Fast, efficient RNA-Seq metrics for quality control and process optimization

    • I like to use RNA-SeQC (https://github.com/getzlab/rnaseqc). It shows the percentage of forward/reverse reads that alingned to either the sense or antisense strands. It is also compatible with multiQC which is a big plus.

  • how_are_we_stranded_here

    Check strandedness of RNA-Seq fastq files

    • Piggybacking off this comment to share the link that worked for me (yours landed me on a 404): https://github.com/signalbash/how_are_we_stranded_here

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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