Python covid-19

Open-source Python projects categorized as covid-19 | Edit details

Top 23 Python covid-19 Projects

  • covid-19-data

    Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data (by owid)

    Project mention: [University Biostatistic] Need help finding some good quality health dataset (any like smoking or cancer) online like a CSV file. | reddit.com/r/HomeworkHelp | 2022-05-07
  • corona

    Reverse engineering SARS-CoV-2

    Project mention: Reverse engineering SARS-CoV-2 | reddit.com/r/CKsTechNews | 2021-07-04
  • Scout APM

    Less time debugging, more time building. Scout APM allows you to find and fix performance issues with no hassle. Now with error monitoring and external services monitoring, Scout is a developer's best friend when it comes to application development.

  • coronavirus-tracker-api

    🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!

    Project mention: Covid cases report via GitHub action | dev.to | 2021-11-20

    You can pretty easy custom the workflow time when run or even information what it gets. If you want use this API but different information have a look here to learn about endpoints: https://coronavirus-tracker-api.herokuapp.com

  • tika-python

    Tika-Python is a Python binding to the Apache Tika™ REST services allowing Tika to be called natively in the Python community.

    Project mention: Extract text from PDF | reddit.com/r/Python | 2021-11-02

    Tika is from Apache so yes its original code base is Java but it has bindings in other languages. Checkout Tika-Python!

  • covid-19

    Novel Coronavirus 2019 time series data on cases (by datasets)

    Project mention: covid-19: NEW Data - star count:1139.0 | reddit.com/r/algoprojects | 2022-04-02
  • paperai

    📄 🤖 AI-powered literature discovery and review engine for medical/scientific papers

    Project mention: Search on vector embeddings | reddit.com/r/LanguageTechnology | 2021-05-27

    You can also consider implementing a required token strategy for certain terms that must be in the results. See an example of that here: https://github.com/neuml/paperai/blob/master/src/python/paperai/query.py#L104 - example of a query like that would be "great +iphone tutorials"

  • covid-vaccine-booking

    This very basic script can be used to automate some steps on Co-WIN Platform.

    Project mention: Tired of not being able to find a slot inspite of using Telegram, under45, etc? | reddit.com/r/pune | 2021-05-29
  • SonarLint

    Deliver Cleaner and Safer Code - Right in Your IDE of Choice!. SonarLint is a free and open source IDE extension that identifies and catches bugs and vulnerabilities as you code, directly in the IDE. Install from your favorite IDE marketplace today.

  • seirsplus

    Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

    Project mention: SIERS Modeling Primer: Like Pandemic the Game But With More Math | reddit.com/r/Destiny | 2022-01-15

    Ryan Mcgee's Python SEIRS Model

  • vaccipy

    Automatische Impfterminbuchung für www.impfterminservice.de

    Project mention: Some tiny personal programs I've written | news.ycombinator.com | 2022-03-09

    This was done with a lot of collaborative effort in Germany:

    https://github.com/iamnotturner/vaccipy

  • BERTweet

    BERTweet: A pre-trained language model for English Tweets (EMNLP-2020)

    Project mention: A pre-trained BERT-like model with recent events? | reddit.com/r/LanguageTechnology | 2021-06-24

    Not sure if that's what you are looking for, but BERTweet has model trained on tweets containing COVID keywords https://github.com/VinAIResearch/BERTweet

  • covid-19-open-data

    Datasets of daily time-series data related to COVID-19 for over 20,000 distinct locations around the world.

    Project mention: covid-19-open-data: NEW Data - star count:358.0 | reddit.com/r/algoprojects | 2021-11-12
  • Covid-19-API

    This is the code running in AWS Lambda powering covid-api.mmediagroup.fr/v1. The API provides realtime and historical data on Coronavirus COVID-19 confirmed cases, deaths, and recovered cases. This API has now been called over 40 million times, thank you! (by M-Media-Group)

    Project mention: Public API keys | reddit.com/r/programiranje | 2021-12-08
  • asreview

    Active learning for systematic reviews

  • data

    Daily time-series epidemiology and hospitalization data for all countries, state/province data for 50+ countries and county/municipality data for CO, FR, NL, PH, UK and US. Covariates for all available regions include demographics, mobility reports, government interventions, weather and more. (by open-covid-19)

    Project mention: data: NEW Data - star count:280.0 | reddit.com/r/algoprojects | 2021-12-25
  • covariants

    Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

    Project mention: 1,000 cases of new Omicron subvariant BA.2.20 found in Ontario: PHO | reddit.com/r/Coronavirus | 2022-05-20
  • impf-botpy

    Impf Bot.py 🐍⚡ – Automatisierung für den Corona ImpfterminService Bot

    Project mention: Ich beim täglichen Versuch einen Impftermin zu buchen | reddit.com/r/de | 2021-06-15
  • covasim

    COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

    Project mention: Daily Coronavirus Megathread - 19 September 2021 | reddit.com/r/melbourne | 2021-09-18
  • covid-19-germany-gae

    COVID-19 statistics for Germany. For states and counties. With time series data. Daily updates. Official RKI numbers.

    Project mention: covid-19-germany-gae: NEW Data - star count:141.0 | reddit.com/r/algoprojects | 2022-01-15
  • Coswara-Data

    Data repository of Project Coswara

  • CoWin-Vaccine-Notifier

    Automated Python Script to retrieve vaccine slots availability and get notified when a slot is available.

  • paperetl

    📄 ⚙️ ETL processes for medical and scientific papers

  • COVID-19-RNA-Seq-datasets

    A repository for sharing information on available COVID-19 RNA-Seq datasets

    Project mention: What's so special about covid that it needs multiple vaccines and boosters and all these mandates and passports ? | reddit.com/r/conspiracy | 2021-10-30
  • covid-19-datasette

    Deploys a Datasette instance of COVID-19 data from Johns Hopkins CSSE and the New York Times

    Project mention: Automating a Software Company with GitHub Actions | news.ycombinator.com | 2021-08-19

    I don't have any at the moment where a commit to one triggers a build in another, but I have a bunch that run on a schedule, pull code from other repos and do stuff with it.

    Best example of that is here: https://github.com/simonw/covid-19-datasette/blob/main/.gith...

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2022-05-20.

Python covid-19 related posts

Index

What are some of the best open-source covid-19 projects in Python? This list will help you:

Project Stars
1 covid-19-data 5,269
2 corona 2,205
3 coronavirus-tracker-api 1,590
4 tika-python 1,166
5 covid-19 1,151
6 paperai 738
7 covid-vaccine-booking 608
8 seirsplus 592
9 vaccipy 556
10 BERTweet 444
11 covid-19-open-data 429
12 Covid-19-API 403
13 asreview 337
14 data 281
15 covariants 277
16 impf-botpy 254
17 covasim 191
18 covid-19-germany-gae 146
19 Coswara-Data 123
20 CoWin-Vaccine-Notifier 100
21 paperetl 97
22 COVID-19-RNA-Seq-datasets 62
23 covid-19-datasette 62
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