Python covid-19

Open-source Python projects categorized as covid-19
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Topics: #Coronavirus #Covid19 #Python #Covid #covid19-data
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Top 23 Python covid-19 Projects

  • covid-19-data

    Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data (by owid)

    Project mention: COVID no longer a global health emergency, World Health Organisation says | reddit.com/r/Coronavirus | 2023-05-05

    Finally! This is the right thing to do. COVID-19 now kills only 378 people each day globally (7-day rolling average, Source: https://ourworldindata.org/coronavirus). This is extremely low compared to almost the entire pandemic.

  • corona

    Reverse engineering SARS-CoV-2

  • ONLYOFFICE

    ONLYOFFICE Docs — document collaboration in your environment. Powerful document editing and collaboration in your app or environment. Ultimate security, API and 30+ ready connectors, SaaS or on-premises

  • coronavirus-tracker-api

    🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!

  • tika-python

    Tika-Python is a Python binding to the Apache Tika™ REST services allowing Tika to be called natively in the Python community.

    Project mention: Document Parsing - an unsolved problem? | reddit.com/r/LanguageTechnology | 2022-07-19

    At my previous job we had the same problem which we solved by using Tika. We called it on the server along with other stuff, but there is also a Python binding.

  • covid-19

    Novel Coronavirus 2019 time series data on cases (by datasets)

  • seirsplus

    Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

  • covid-vaccine-booking

    This very basic script can be used to automate some steps on Co-WIN Platform.

  • InfluxDB

    Access the most powerful time series database as a service. Ingest, store, & analyze all types of time series data in a fully-managed, purpose-built database. Keep data forever with low-cost storage and superior data compression.

  • doctoshotgun

    Script to automatically book a vaccine slot on Doctolib in the next seven days.

    Project mention: Mercredi Tech - 2022-06-01 | reddit.com/r/france | 2022-05-31

  • vaccipy

    Automatische Impfterminbuchung für www.impfterminservice.de

  • BERTweet

    BERTweet: A pre-trained language model for English Tweets (EMNLP-2020)

  • asreview

    Active learning for systematic reviews

  • MedCAT

    Medical Concept Annotation Tool

    Project mention: [R] Foresight: Deep Generative Modelling of Patient Timelines using Electronic Health Records | reddit.com/r/MachineLearning | 2022-12-20

    You can find medcat here.

  • People-Counting-in-Real-Time

    People Counting in Real-Time with an IP camera.

    Project mention: Error when trying to install dlib using "pip install dlib" | reddit.com/r/learnpython | 2023-02-15

    I'm trying to install dlib using "pip install dlib" for this code: https://github.com/saimj7/People-Counting-in-Real-Time Because when I try to run it I get this error: ModuleNotFoundError: No module named 'dlib'

  • covariants

    Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

    Project mention: China's Covid cases hit record as dissent grows over tough restrictions | reddit.com/r/Coronavirus | 2022-11-24

    This process has produced thousands of variants already, and a considerable number that have bypassed immunity to previous variants. https://covariants.org/

  • data

    Daily time-series epidemiology and hospitalization data for all countries, state/province data for 50+ countries and county/municipality data for CO, FR, NL, PH, UK and US. Covariates for all available regions include demographics, mobility reports, government interventions, weather and more. (by open-covid-19)

  • impf-botpy

    Impf Bot.py 🐍⚡ – Automatisierung für den Corona ImpfterminService Bot

  • covasim

    COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

  • covid-19-germany-gae

    COVID-19 statistics for Germany. For states and counties. With time series data. Daily updates. Official RKI numbers.

  • CoWin-Vaccine-Notifier

    Automated Python Script to retrieve vaccine slots availability and get notified when a slot is available.

  • covid19-sir

    CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.

    Project mention: Show HN: Deptry, a tool to check for dependency issues in a Python project | news.ycombinator.com | 2022-09-14

    I have recently been working on a project called `deptry`, a command line tool to check for issues in the dependencies of Python projects. It can be used to find obsolete, missing, transitive and misplaced development dependencies. It supports the following types of projects:

    - Projects that use Poetry and a corresponding pyproject.toml file

    - Projects that use a requirements.txt file according to the pip standards

    ---

    * Documentation: https://fpgmaas.github.io/deptry/

    * GitHub repository: https://github.com/fpgmaas/deptry

    ---

    I am quite happy with the project in its current form, but I also realise there is still a lot of room left for improvement. Therefore, I hope some people are willing to give it a try and provide me with feedback. So; if you have a project with a long list of dependencies and a little bit of spare time on your hands, please give it a try and let me know what you think!

    If you encounter any issues, find a bug, or have any other form of feedback, please don't hesitate to raise an issue in the GitHub repository, or leave a comment here.

    Kind regards,

    Florian

    P.S. Many thanks to Hirokazu Takaya (https://github.com/lisphilar) for incorporating it in the CI/CD pipeline of his project covid19-sir (https://github.com/lisphilar/covid19-sir). It provided me with very valuable early feedback.

  • COVID-19-RNA-Seq-datasets

    A repository for sharing information on available COVID-19 RNA-Seq datasets

  • COVID19_AgentBasedSimulation

    COVID-ABS: An Agent-Based Model of COVID-19 Epidemic to Simulate Health and Economic Effects of Social Distancing Interventions

  • typedb-bio

    TypeDB Bio: Biomedical Knowledge Graph

  • CodiumAI

    TestGPT | Generating meaningful tests for busy devs. Get non-trivial tests (and trivial, too!) suggested right inside your IDE, so you can code smart, create more value, and stay confident when you push.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2023-05-05.

Python covid-19 related posts

Index

What are some of the best open-source covid-19 projects in Python? This list will help you:

Project Stars
1 covid-19-data 5,592
2 corona 2,377
3 coronavirus-tracker-api 1,603
4 tika-python 1,283
5 covid-19 1,154
6 seirsplus 635
7 covid-vaccine-booking 601
8 doctoshotgun 556
9 vaccipy 536
10 BERTweet 516
11 asreview 442
12 MedCAT 331
13 People-Counting-in-Real-Time 324
14 covariants 304
15 data 277
16 impf-botpy 253
17 covasim 221
18 covid-19-germany-gae 147
19 CoWin-Vaccine-Notifier 102
20 covid19-sir 98
21 COVID-19-RNA-Seq-datasets 69
22 COVID19_AgentBasedSimulation 66
23 typedb-bio 64

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