Python covid-19

Open-source Python projects categorized as covid-19

Top 23 Python covid-19 Projects

  • covid-19-data

    Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data (by owid)

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  • corona

    Reverse engineering SARS-CoV-2

  • coronavirus-tracker-api

    🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!

  • tika-python

    Tika-Python is a Python binding to the Apache Tika™ REST services allowing Tika to be called natively in the Python community.

  • covid-19

    Novel Coronavirus 2019 time series data on cases (by datasets)

  • seirsplus

    Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

  • covid-vaccine-booking

    This tool can be used to automate booking slots on Co-WIN Platform.

  • InfluxDB

    Purpose built for real-time analytics at any scale. InfluxDB Platform is powered by columnar analytics, optimized for cost-efficient storage, and built with open data standards.

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  • BERTweet

    BERTweet: A pre-trained language model for English Tweets (EMNLP-2020)

  • doctoshotgun

    Script to automatically book a vaccine slot on Doctolib in the next seven days.

  • People-Counting-in-Real-Time

    People Counting in Real-Time with an IP camera.

    Project mention: Building an occupancy sensor with a $5 ESP32 and a serverless DB | news.ycombinator.com | 2023-11-13

    And with more of these, you could track where everyone is all the time!

    Here's a camera based video people counter.[1] This is a bit less intrusive.

    [1] https://github.com/saimj7/People-Counting-in-Real-Time

  • MedCAT

    Medical Concept Annotation Tool

  • covariants

    Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

    Project mention: At what point do you think things will change? | /r/ZeroCovidCommunity | 2023-12-08

    "Publicly available data on the number of analyzed sequences over two-week windows for each country were extracted from covariants.org and Global Initiative on Sharing All Influenza Data (GISAID) initiative databases [3, 4]."

  • data

    Daily time-series epidemiology and hospitalization data for all countries, state/province data for 50+ countries and county/municipality data for CO, FR, NL, PH, UK and US. Covariates for all available regions include demographics, mobility reports, government interventions, weather and more. (by open-covid-19)

  • covasim

    COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

  • impf-botpy

    Impf Bot.py 🐍⚡ – Automatisierung für den Corona ImpfterminService Bot

  • covid-19-germany-gae

    COVID-19 statistics for Germany. For states and counties. With time series data. Daily updates. Official RKI numbers.

  • covid19-sir

    CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.

  • CoWin-Vaccine-Notifier

    Automated Python Script to retrieve vaccine slots availability and get notified when a slot is available.

  • COVID19_AgentBasedSimulation

    COVID-ABS: An Agent-Based Model of COVID-19 Epidemic to Simulate Health and Economic Effects of Social Distancing Interventions

  • COVID-19-RNA-Seq-datasets

    A repository for sharing information on available COVID-19 RNA-Seq datasets

  • covid-19-datasette

    Deploys a Datasette instance of COVID-19 data from Johns Hopkins CSSE and the New York Times

  • PHES-ODM

    The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environmental surveillance.

  • covid-19-genomes

    Projects on COVID-19 topic of genomic sequencing - mostly DataViz

  • SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

    SaaSHub logo
NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python covid-19 discussion

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Python covid-19 related posts

  • At what point do you think things will change?

    1 project | /r/ZeroCovidCommunity | 8 Dec 2023
  • covid-19-open-data: NEW Data - star count:460.0

    1 project | /r/algoprojects | 6 Nov 2023
  • [P] Data structures for large sequences

    1 project | /r/LearningMachines | 19 Sep 2023
  • [P] Data structures for large sequences

    1 project | /r/MachineLearning | 12 Sep 2023
  • COVID no longer a global health emergency, World Health Organisation says

    1 project | /r/Coronavirus | 5 May 2023
  • [P] Parse research papers into structured data

    2 projects | /r/MachineLearning | 28 Jan 2023
  • Parse research papers into a structured dataset

    1 project | news.ycombinator.com | 28 Jan 2023
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    www.scoutapm.com | 17 Sep 2024
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Index

What are some of the best open-source covid-19 projects in Python? This list will help you:

Project Stars
1 covid-19-data 5,660
2 corona 2,486
3 coronavirus-tracker-api 1,593
4 tika-python 1,482
5 covid-19 1,155
6 seirsplus 657
7 covid-vaccine-booking 597
8 BERTweet 574
9 doctoshotgun 549
10 People-Counting-in-Real-Time 503
11 MedCAT 431
12 covariants 316
13 data 277
14 covasim 247
15 impf-botpy 243
16 covid-19-germany-gae 145
17 covid19-sir 109
18 CoWin-Vaccine-Notifier 106
19 COVID19_AgentBasedSimulation 83
20 COVID-19-RNA-Seq-datasets 78
21 covid-19-datasette 61
22 PHES-ODM 54
23 covid-19-genomes 50

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