Python covid-19

Open-source Python projects categorized as covid-19
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Topics: Coronavirus Covid19 Python Covid covid19-data
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Top 23 Python covid-19 Projects

  • covid-19-data

    Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data (by owid)

    Project mention: COVID no longer a global health emergency, World Health Organisation says | /r/Coronavirus | 2023-05-05

    Finally! This is the right thing to do. COVID-19 now kills only 378 people each day globally (7-day rolling average, Source: https://ourworldindata.org/coronavirus). This is extremely low compared to almost the entire pandemic.

  • corona

    Reverse engineering SARS-CoV-2

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  • coronavirus-tracker-api

    🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!

  • tika-python

    Tika-Python is a Python binding to the Apache Tika™ REST services allowing Tika to be called natively in the Python community.

  • covid-19

    Novel Coronavirus 2019 time series data on cases (by datasets)

  • seirsplus

    Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

  • covid-vaccine-booking

    This tool can be used to automate booking slots on Co-WIN Platform.

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  • BERTweet

    BERTweet: A pre-trained language model for English Tweets (EMNLP-2020)

  • doctoshotgun

    Script to automatically book a vaccine slot on Doctolib in the next seven days.

  • vaccipy

    Automatisierte Impfterminbuchung für www.impfterminservice.de

  • People-Counting-in-Real-Time

    People Counting in Real-Time with an IP camera.

    Project mention: Building an occupancy sensor with a $5 ESP32 and a serverless DB | news.ycombinator.com | 2023-11-13

    And with more of these, you could track where everyone is all the time!

    Here's a camera based video people counter.[1] This is a bit less intrusive.

    [1] https://github.com/saimj7/People-Counting-in-Real-Time

  • MedCAT

    Medical Concept Annotation Tool

  • covariants

    Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

    Project mention: At what point do you think things will change? | /r/ZeroCovidCommunity | 2023-12-08

    "Publicly available data on the number of analyzed sequences over two-week windows for each country were extracted from covariants.org and Global Initiative on Sharing All Influenza Data (GISAID) initiative databases [3, 4]."

  • data

    Daily time-series epidemiology and hospitalization data for all countries, state/province data for 50+ countries and county/municipality data for CO, FR, NL, PH, UK and US. Covariates for all available regions include demographics, mobility reports, government interventions, weather and more. (by open-covid-19)

  • impf-botpy

    Impf Bot.py 🐍⚡ – Automatisierung für den Corona ImpfterminService Bot

  • covasim

    COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

  • covid-19-germany-gae

    COVID-19 statistics for Germany. For states and counties. With time series data. Daily updates. Official RKI numbers.

  • covid19-sir

    CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.

  • CoWin-Vaccine-Notifier

    Automated Python Script to retrieve vaccine slots availability and get notified when a slot is available.

  • COVID19_AgentBasedSimulation

    COVID-ABS: An Agent-Based Model of COVID-19 Epidemic to Simulate Health and Economic Effects of Social Distancing Interventions

  • COVID-19-RNA-Seq-datasets

    A repository for sharing information on available COVID-19 RNA-Seq datasets

  • covid-19-datasette

    Deploys a Datasette instance of COVID-19 data from Johns Hopkins CSSE and the New York Times

  • PHES-ODM

    The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environmental surveillance.

  • SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2023-12-08.

Python covid-19 related posts

Index

What are some of the best open-source covid-19 projects in Python? This list will help you:

Project Stars
1 covid-19-data 5,636
2 corona 2,478
3 coronavirus-tracker-api 1,599
4 tika-python 1,406
5 covid-19 1,155
6 seirsplus 646
7 covid-vaccine-booking 598
8 BERTweet 555
9 doctoshotgun 551
10 vaccipy 521
11 People-Counting-in-Real-Time 466
12 MedCAT 407
13 covariants 314
14 data 276
15 impf-botpy 246
16 covasim 242
17 covid-19-germany-gae 147
18 covid19-sir 108
19 CoWin-Vaccine-Notifier 107
20 COVID19_AgentBasedSimulation 80
21 COVID-19-RNA-Seq-datasets 75
22 covid-19-datasette 61
23 PHES-ODM 51

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