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Top 23 Python covid-19 Projects
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covid-19-data
Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data (by owid)
Project mention: David Attenborough at 99: 'I will not see how the story ends' | news.ycombinator.com | 2025-06-19There's a nice visual here [1] that shows excess mortality instead of relying on COVID numbers. This helps control for different standards in measurement/demographics, to some degree. After all was said and done the difference between countries was pretty small. The US had a relatively poor outcome for COVID and ended up with excess deaths of 434 per 100k. Australia had one of the best (amongst advanced economies), and ended up with 163. There were large relative differences, but the absolute differences were small - those values are (per 100k) 99.72% the same.
And behaviors were not really predictive of outcomes. Gibraltar, for instance, was the first country to achieve complete vaccination coverage. The media ran tons of stories on them being a window into a post-COVID future because cases there plummeted. Then the next COVID wave hit and cases skyrocketed there, just like everywhere else. After all was said and done they ended up closer to the US than Australia with excess mortality of 300.
[1] - https://ourworldindata.org/coronavirus
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InfluxDB
InfluxDB – Built for High-Performance Time Series Workloads. InfluxDB 3 OSS is now GA. Transform, enrich, and act on time series data directly in the database. Automate critical tasks and eliminate the need to move data externally. Download now.
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tika-python
Tika-Python is a Python binding to the Apache Tika™ REST services allowing Tika to be called natively in the Python community.
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coronavirus-tracker-api
🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!
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seirsplus
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
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Stream
Stream - Scalable APIs for Chat, Feeds, Moderation, & Video. Stream helps developers build engaging apps that scale to millions with performant and flexible Chat, Feeds, Moderation, and Video APIs and SDKs powered by a global edge network and enterprise-grade infrastructure.
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covariants
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
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data
Daily time-series epidemiology and hospitalization data for all countries, state/province data for 50+ countries and county/municipality data for CO, FR, NL, PH, UK and US. Covariates for all available regions include demographics, mobility reports, government interventions, weather and more. (by open-covid-19)
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covasim
COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
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covid-19-germany-gae
COVID-19 statistics for Germany. For states and counties. With time series data. Daily updates. Official RKI numbers.
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covid19-sir
CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.
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CoWin-Vaccine-Notifier
Automated Python Script to retrieve vaccine slots availability and get notified when a slot is available.
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COVID19_AgentBasedSimulation
COVID-ABS: An Agent-Based Model of COVID-19 Epidemic to Simulate Health and Economic Effects of Social Distancing Interventions
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COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets
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covid-19-datasette
Deploys a Datasette instance of COVID-19 data from Johns Hopkins CSSE and the New York Times
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PHES-ODM
The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environmental surveillance.
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SaaSHub
SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives
NOTE:
The open source projects on this list are ordered by number of github stars.
The number of mentions indicates repo mentiontions in the last 12 Months or
since we started tracking (Dec 2020).
Python covid-19 discussion
Python covid-19 related posts
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David Attenborough at 99: 'I will not see how the story ends'
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Hong Kong Covid-19 Data Sourcing (2020)
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At what point do you think things will change?
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covid-19-open-data: NEW Data - star count:460.0
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[P] Data structures for large sequences
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[P] Data structures for large sequences
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COVID no longer a global health emergency, World Health Organisation says
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A note from our sponsor - InfluxDB
www.influxdata.com | 11 Jul 2025
Index
What are some of the best open-source covid-19 projects in Python? This list will help you:
| # | Project | Stars |
|---|---|---|
| 1 | covid-19-data | 5,664 |
| 2 | corona | 2,489 |
| 3 | tika-python | 1,596 |
| 4 | coronavirus-tracker-api | 1,587 |
| 5 | covid-19 | 1,166 |
| 6 | seirsplus | 669 |
| 7 | covid-vaccine-booking | 598 |
| 8 | BERTweet | 594 |
| 9 | People-Counting-in-Real-Time | 569 |
| 10 | doctoshotgun | 552 |
| 11 | MedCAT | 501 |
| 12 | covariants | 320 |
| 13 | data | 281 |
| 14 | covasim | 269 |
| 15 | impf-botpy | 243 |
| 16 | covid-19-germany-gae | 148 |
| 17 | covid19-sir | 112 |
| 18 | CoWin-Vaccine-Notifier | 107 |
| 19 | COVID19_AgentBasedSimulation | 87 |
| 20 | COVID-19-RNA-Seq-datasets | 78 |
| 21 | covid-19-datasette | 62 |
| 22 | PHES-ODM | 54 |
| 23 | covid-19-genomes | 54 |
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InfluxDB 3 OSS is now GA. Transform, enrich, and act on time series data directly in the database. Automate critical tasks and eliminate the need to move data externally. Download now.
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