Python covid-19

Open-source Python projects categorized as covid-19

Top 23 Python covid-19 Projects

  1. covid-19-data

    Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data (by owid)

    Project mention: David Attenborough at 99: 'I will not see how the story ends' | news.ycombinator.com | 2025-06-19

    There's a nice visual here [1] that shows excess mortality instead of relying on COVID numbers. This helps control for different standards in measurement/demographics, to some degree. After all was said and done the difference between countries was pretty small. The US had a relatively poor outcome for COVID and ended up with excess deaths of 434 per 100k. Australia had one of the best (amongst advanced economies), and ended up with 163. There were large relative differences, but the absolute differences were small - those values are (per 100k) 99.72% the same.

    And behaviors were not really predictive of outcomes. Gibraltar, for instance, was the first country to achieve complete vaccination coverage. The media ran tons of stories on them being a window into a post-COVID future because cases there plummeted. Then the next COVID wave hit and cases skyrocketed there, just like everywhere else. After all was said and done they ended up closer to the US than Australia with excess mortality of 300.

    [1] - https://ourworldindata.org/coronavirus

  2. InfluxDB

    InfluxDB – Built for High-Performance Time Series Workloads. InfluxDB 3 OSS is now GA. Transform, enrich, and act on time series data directly in the database. Automate critical tasks and eliminate the need to move data externally. Download now.

    InfluxDB logo
  3. corona

    Reverse engineering SARS-CoV-2 (by geohot)

  4. tika-python

    Tika-Python is a Python binding to the Apache Tika™ REST services allowing Tika to be called natively in the Python community.

  5. coronavirus-tracker-api

    🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🔥 FastAPI framework. Supports multiple sources!

  6. covid-19

    Novel Coronavirus 2019 time series data on cases (by datasets)

  7. seirsplus

    Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

  8. covid-vaccine-booking

    This tool can be used to automate booking slots on Co-WIN Platform.

  9. Stream

    Stream - Scalable APIs for Chat, Feeds, Moderation, & Video. Stream helps developers build engaging apps that scale to millions with performant and flexible Chat, Feeds, Moderation, and Video APIs and SDKs powered by a global edge network and enterprise-grade infrastructure.

    Stream logo
  10. BERTweet

    BERTweet: A pre-trained language model for English Tweets (EMNLP-2020)

  11. People-Counting-in-Real-Time

    People Counting in Real-Time with an IP camera.

  12. doctoshotgun

    Script to automatically book a vaccine slot on Doctolib in the next seven days.

  13. MedCAT

    Medical Concept Annotation Tool

  14. covariants

    Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

  15. data

    Daily time-series epidemiology and hospitalization data for all countries, state/province data for 50+ countries and county/municipality data for CO, FR, NL, PH, UK and US. Covariates for all available regions include demographics, mobility reports, government interventions, weather and more. (by open-covid-19)

  16. covasim

    COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

  17. impf-botpy

    Impf Bot.py 🐍⚡ – Automatisierung für den Corona ImpfterminService Bot

  18. covid-19-germany-gae

    COVID-19 statistics for Germany. For states and counties. With time series data. Daily updates. Official RKI numbers.

  19. covid19-sir

    CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.

  20. CoWin-Vaccine-Notifier

    Automated Python Script to retrieve vaccine slots availability and get notified when a slot is available.

  21. COVID19_AgentBasedSimulation

    COVID-ABS: An Agent-Based Model of COVID-19 Epidemic to Simulate Health and Economic Effects of Social Distancing Interventions

  22. COVID-19-RNA-Seq-datasets

    A repository for sharing information on available COVID-19 RNA-Seq datasets

  23. covid-19-datasette

    Deploys a Datasette instance of COVID-19 data from Johns Hopkins CSSE and the New York Times

  24. PHES-ODM

    The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environmental surveillance.

  25. covid-19-genomes

    Projects on COVID-19 topic of genomic sequencing - mostly DataViz

  26. SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

    SaaSHub logo
NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python covid-19 discussion

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Python covid-19 related posts

  • David Attenborough at 99: 'I will not see how the story ends'

    1 project | news.ycombinator.com | 19 Jun 2025
  • Hong Kong Covid-19 Data Sourcing (2020)

    2 projects | dev.to | 13 Nov 2024
  • At what point do you think things will change?

    1 project | /r/ZeroCovidCommunity | 8 Dec 2023
  • covid-19-open-data: NEW Data - star count:460.0

    1 project | /r/algoprojects | 6 Nov 2023
  • [P] Data structures for large sequences

    1 project | /r/LearningMachines | 19 Sep 2023
  • [P] Data structures for large sequences

    1 project | /r/MachineLearning | 12 Sep 2023
  • COVID no longer a global health emergency, World Health Organisation says

    1 project | /r/Coronavirus | 5 May 2023
  • A note from our sponsor - InfluxDB
    www.influxdata.com | 11 Jul 2025
    InfluxDB 3 OSS is now GA. Transform, enrich, and act on time series data directly in the database. Automate critical tasks and eliminate the need to move data externally. Download now. Learn more →

Index

What are some of the best open-source covid-19 projects in Python? This list will help you:

# Project Stars
1 covid-19-data 5,664
2 corona 2,489
3 tika-python 1,596
4 coronavirus-tracker-api 1,587
5 covid-19 1,166
6 seirsplus 669
7 covid-vaccine-booking 598
8 BERTweet 594
9 People-Counting-in-Real-Time 569
10 doctoshotgun 552
11 MedCAT 501
12 covariants 320
13 data 281
14 covasim 269
15 impf-botpy 243
16 covid-19-germany-gae 148
17 covid19-sir 112
18 CoWin-Vaccine-Notifier 107
19 COVID19_AgentBasedSimulation 87
20 COVID-19-RNA-Seq-datasets 78
21 covid-19-datasette 62
22 PHES-ODM 54
23 covid-19-genomes 54

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