Python single-cell

Open-source Python projects categorized as single-cell
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Topics: rna-seq Data Science Machine Learning Python Deep Learning
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Top 3 Python single-cell Projects

  • dance

    DANCE: a deep learning library and benchmark platform for single-cell analysis (by OmicsML)

  • COVID-19-RNA-Seq-datasets

    A repository for sharing information on available COVID-19 RNA-Seq datasets

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo

  • cellSNP

    Pileup biallelic SNPs from single-cell and bulk RNA-seq data

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python single-cell related posts

  • How to create VCFs for scRNA-Seq data sets

    1 project | /r/bioinformatics | 16 Mar 2023

  • Annotating variants in single-cell sequencing data

    1 project | /r/bioinformatics | 13 Mar 2021

Index

What are some of the best open-source single-cell projects in Python? This list will help you:

Project Stars
1 dance 323
2 COVID-19-RNA-Seq-datasets 75
3 cellSNP 69

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