How to create VCFs for scRNA-Seq data sets

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics
single-cell rna-seq genetic-variants Genotyping

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  • cellSNP

    Pileup biallelic SNPs from single-cell and bulk RNA-seq data

    • cellSNP is popular and works well.

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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