RNA VELOCITY

• alevin-fry

  3 152 7.2 Rust

  🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

  

You can also get this information easily from the raw data using our alevin-fry tool. It produces a count matrix with spliced/unspliced/ambiguous counts that can easily be imported into python or R for velocity analysis. You can read more about alevin-fry here and check it out on github here. It's also easily installable via bioconda, and there's even a tool to simplify execution, called simpleaf. I'm happy to answer any questions you might have about using it!

• simpleaf

  1 42 9.0 Rust

  A rust framework to make using alevin-fry even simpler

  

You can also get this information easily from the raw data using our alevin-fry tool. It produces a count matrix with spliced/unspliced/ambiguous counts that can easily be imported into python or R for velocity analysis. You can read more about alevin-fry here and check it out on github here. It's also easily installable via bioconda, and there's even a tool to simplify execution, called simpleaf. I'm happy to answer any questions you might have about using it!

• InfluxDB

  www.influxdata.com featured

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

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