Top 8 Python sars-cov-2 Projects

covid-19-data

305 5,637 10.0 Python

Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data (by owid)

Project mention: COVID no longer a global health emergency, World Health Organisation says | /r/Coronavirus | 2023-05-05

Finally! This is the right thing to do. COVID-19 now kills only 378 people each day globally (7-day rolling average, Source: https://ourworldindata.org/coronavirus). This is extremely low compared to almost the entire pandemic.

ncov

13 1,351 8.4 Python

Nextstrain build for novel coronavirus SARS-CoV-2
InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
seirsplus

1 646 0.0 Python

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
covariants

51 315 9.0 Python

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

Project mention: At what point do you think things will change? | /r/ZeroCovidCommunity | 2023-12-08

"Publicly available data on the number of analyzed sequences over two-week windows for each country were extracted from covariants.org and Global Initiative on Sharing All Influenza Data (GISAID) initiative databases [3, 4]."

COVID-19-RNA-Seq-datasets

3 75 3.8 Python

A repository for sharing information on available COVID-19 RNA-Seq datasets
PHES-ODM

14 51 4.7 Python

The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environmental surveillance.
covid19-eu-data-api

1 6 9.4 Python

Clean up data
WorkOS

workos.com sponsored

The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
SARSCov2Solar

3 0 7.1 Python

Biological Sequences, Machine Learning and SARSCov2

Project mention: [P] Data structures for large sequences | /r/LearningMachines | 2023-09-19

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).