rnaseq-nf
A proof of concept of RNAseq pipeline (by nextflow-io)
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline (by nf-core)
Our great sponsors
| rnaseq-nf | eager | |
|---|---|---|
| 1 | 1 | |
| 62 | 124 | |
| - | 4.0% | |
| 5.8 | 7.6 | |
| 16 days ago | 6 days ago | |
| Nextflow | Nextflow | |
| Mozilla Public License 2.0 | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
rnaseq-nf
Posts with mentions or reviews of rnaseq-nf.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Snakemake vs. nf vs. CWL
For example look at: https://github.com/nextflow-io/rnaseq-nf/blob/master/nextflow.config#L39
eager
Posts with mentions or reviews of eager.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Generate consensus FASTA files pipeline
So after a lot of reading and talking with some people i was able to do it with the eager pipeline (https://github.com/nf-core/eager) migth be a bit dificult to set up, but it is really useful. I leave this here for you and other people that may see this ;)
What are some alternatives?
When comparing rnaseq-nf and eager you can also consider the following projects:
sarek - Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
SqueezeMeta - A complete pipeline for metagenomic analysis
rnatoy - A proof of concept RNA-Seq pipeline with Nextflow
mag - Assembly and binning of metagenomes
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
patterns - A curated collection of Nextflow implementation patterns
masurca
rare-disease-wf - (WIP) best-practices workflow for rare disease
configs - Config files used to define parameters specific to compute environments at different Institutions