pyCirclize
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart) (by moshi4)
tinycov
Command line tool to plot genomic coverage from a BAM file (by cmdoret)
| pyCirclize | tinycov | |
|---|---|---|
| 6 | 1 | |
| 619 | 13 | |
| - | - | |
| 8.6 | 1.5 | |
| about 1 month ago | about 1 year ago | |
| Python | Python | |
| MIT License | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pyCirclize
Posts with mentions or reviews of pyCirclize.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-04-02.
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Circular enrichment map - does anyone know how to make these?
https://github.com/moshi4/pyCirclize could help.
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This Week In Python
pyCirclize – Circular visualization in Python
- Show HN: PyCirclize – Circular Visualization in Python
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Circular visualization in Python (Circos Plot, Chord Diagram)
pyCirclize (GitHub / Document) enables easy and flexible execution of circular data visualizations such as Chord Diagram and Circos from the Python API. As an example, user can perform the following circular data visualization.
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pyCirclize: Circular visualization in Python (Chord Diagram, Circos Plot)
GitHub | Documentation
tinycov
Posts with mentions or reviews of tinycov.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-06-30.
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Bam viewer with custom fasta reference that's embeddable in Streamlit app?
tinycov I keep finding these small tools built with python, but with no API available, so they require a combination of CLI and Docker to work
What are some alternatives?
When comparing pyCirclize and tinycov you can also consider the following projects:
pyGenomeViz - A genome visualization python package for comparative genomics
ipyigv - A Jupyter wrapper for the igv.js library (representation of genomic data)
pyCircos - python Circos
igv-jupyter - Extension for Jupyter which integrates igv.js
circlize - Circular visualization in R
pynimate - Python package for statistical data animations
dash-bio - Open-source bioinformatics components for Dash
clinker - Gene cluster comparison figure generator
igv-notebook - Module for embedding igv.js in an IPython notebook
mise - dev tools, env vars, task runner
FastANI - Fast Whole-Genome Similarity (ANI) Estimation