tinycov vs igv-jupyter

tinycov

Command line tool to plot genomic coverage from a BAM file (by cmdoret)

Source Code

Suggest alternative

Edit details

igv-jupyter

Extension for Jupyter which integrates igv.js (by g2nb)

Jupyter labextension Visualization

Source Code

Suggest alternative

Edit details

InfluxDB - Power Real-Time Data Analytics at Scale

Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

www.influxdata.com

featured

SaaSHub - Software Alternatives and Reviews

SaaSHub helps you find the best software and product alternatives

www.saashub.com

featured

tinycov		igv-jupyter
	Project
1	Mentions	1
13	Stars	154
-	Growth	0.0%
1.5	Activity	1.8
about 1 year ago	Latest Commit	over 1 year ago
Python	Language	JavaScript
GNU General Public License v3.0 or later	License	MIT License

The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

tinycov

Posts with mentions or reviews of tinycov. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-30.

Bam viewer with custom fasta reference that's embeddable in Streamlit app?
6 projects | /r/bioinformatics | 30 Jun 2023

tinycov I keep finding these small tools built with python, but with no API available, so they require a combination of CLI and Docker to work

igv-jupyter

Posts with mentions or reviews of igv-jupyter. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-30.

Bam viewer with custom fasta reference that's embeddable in Streamlit app?
6 projects | /r/bioinformatics | 30 Jun 2023

igv-notebook and igv-jupyter seem amazing but (unsurprisingly) I could not get them to run anywhere that wasn't a jupyter notebook. I get a kernel error as it tries to initialize itself within streamlit, and I'm not sure how to embed it anywhere else.

What are some alternatives?

When comparing tinycov and igv-jupyter you can also consider the following projects:

ipyigv - A Jupyter wrapper for the igv.js library (representation of genomic data)

configurable-http-proxy - node-http-proxy plus a REST API

pyGenomeViz - A genome visualization python package for comparative genomics

dash-bio - Open-source bioinformatics components for Dash

pybamview - Browser based application for viewing bam alignments

pyCirclize - Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

igv-notebook - Module for embedding igv.js in an IPython notebook

kuwala - Kuwala is the no-code data platform for BI analysts and engineers enabling you to build powerful analytics workflows. We are set out to bring state-of-the-art data engineering tools you love, such as Airbyte, dbt, or Great Expectations together in one intuitive interface built with React Flow. In addition we provide third-party data into data science models and products with a focus on geospatial data. Currently, the following data connectors are available worldwide: a) High-resolution demographics data b) Point of Interests from Open Street Map c) Google Popular Times

ipyleaflet - A Jupyter - Leaflet.js bridge