pyCirclize
FastANI
pyCirclize | FastANI | |
---|---|---|
6 | 1 | |
619 | 348 | |
- | 1.4% | |
8.6 | 3.7 | |
about 1 month ago | 4 months ago | |
Python | C++ | |
MIT License | Apache License 2.0 |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pyCirclize
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Circular enrichment map - does anyone know how to make these?
https://github.com/moshi4/pyCirclize could help.
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This Week In Python
pyCirclize – Circular visualization in Python
- Show HN: PyCirclize – Circular Visualization in Python
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Circular visualization in Python (Circos Plot, Chord Diagram)
pyCirclize (GitHub / Document) enables easy and flexible execution of circular data visualizations such as Chord Diagram and Circos from the Python API. As an example, user can perform the following circular data visualization.
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pyCirclize: Circular visualization in Python (Chord Diagram, Circos Plot)
GitHub | Documentation
FastANI
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awesome-genome-visualization - my futile attempt to catalog all sorts of genome visualization tools (currently at 286 tools with screenshots now!)
FastANI (https://github.com/ParBLiSS/FastANI)
What are some alternatives?
pyGenomeViz - A genome visualization python package for comparative genomics
pyCircos - python Circos
bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
circlize - Circular visualization in R
awesome-genome-visualization - A list of interesting genome browser or genome-browser-like implementations
pynimate - Python package for statistical data animations
clinker - Gene cluster comparison figure generator
mise - dev tools, env vars, task runner
tinycov - Command line tool to plot genomic coverage from a BAM file
prettymaps - A small set of Python functions to draw pretty maps from OpenStreetMap data. Based on osmnx, matplotlib and shapely libraries.
trio - Trio – a friendly Python library for async concurrency and I/O