cellSNP
Pileup biallelic SNPs from single-cell and bulk RNA-seq data (by single-cell-genetics)
COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets (by urmi-21)
| cellSNP | COVID-19-RNA-Seq-datasets | |
|---|---|---|
| 2 | 3 | |
| 69 | 75 | |
| - | - | |
| 0.0 | 3.8 | |
| almost 2 years ago | about 2 years ago | |
| Python | Python | |
| Apache License 2.0 | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
cellSNP
Posts with mentions or reviews of cellSNP.
We have used some of these posts to build our list of alternatives
and similar projects.
-
How to create VCFs for scRNA-Seq data sets
cellSNP is popular and works well.
-
Annotating variants in single-cell sequencing data
The authors of vireo have a tool called cellSNP that may be helpful as well.
COVID-19-RNA-Seq-datasets
Posts with mentions or reviews of COVID-19-RNA-Seq-datasets.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-10-30.
- What's so special about covid that it needs multiple vaccines and boosters and all these mandates and passports ?
-
Project ideas
Maybe you could present this with an explanation of each dataset? https://github.com/urmi-21/COVID-19-RNA-Seq-datasets
What are some alternatives?
When comparing cellSNP and COVID-19-RNA-Seq-datasets you can also consider the following projects:
Vcflib - C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
RNA-seq-analysis - RNAseq analysis notes from Ming Tang
cellsnp-lite - Efficient genotyping bi-allelic SNPs on single cells
TPMCalculator - TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
covid-19 - Novel Coronavirus 2019 time series data on cases
covid-19-data - Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
scaredi-pi - Simple COVID-19 Ambient Reminder E-Ink Display for Pi