cellSNP
Pileup biallelic SNPs from single-cell and bulk RNA-seq data (by single-cell-genetics)
Vcflib
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings (by vcflib)
| cellSNP | Vcflib | |
|---|---|---|
| 2 | - | |
| 69 | 596 | |
| - | 1.2% | |
| 0.0 | 8.0 | |
| almost 2 years ago | 9 days ago | |
| Python | C++ | |
| Apache License 2.0 | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
cellSNP
Posts with mentions or reviews of cellSNP.
We have used some of these posts to build our list of alternatives
and similar projects.
-
How to create VCFs for scRNA-Seq data sets
cellSNP is popular and works well.
-
Annotating variants in single-cell sequencing data
The authors of vireo have a tool called cellSNP that may be helpful as well.
Vcflib
Posts with mentions or reviews of Vcflib.
We have used some of these posts to build our list of alternatives
and similar projects.
We haven't tracked posts mentioning Vcflib yet.
Tracking mentions began in Dec 2020.
What are some alternatives?
When comparing cellSNP and Vcflib you can also consider the following projects:
COVID-19-RNA-Seq-datasets - A repository for sharing information on available COVID-19 RNA-Seq datasets
libsequence - libsequence: a C++ class library for evolutionary genetic analysis
cellsnp-lite - Efficient genotyping bi-allelic SNPs on single cells
SeqAn - SeqAn's official repository.
Wham - Structural variant detection and association testing
TileDB-VCF - Efficient variant-call data storage and retrieval library using the TileDB storage library.
hap.py - Haplotype VCF comparison tools