C++ variant-calling

Open-source C++ projects categorized as variant-calling
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Topics: Genomics Bioinformatics Data Science single-cell Spark
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Top 3 C++ variant-calling Projects

  • Vcflib

    C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

  • octopus

    Bayesian haplotype-based mutation calling (by luntergroup)

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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  • TileDB-VCF

    Efficient variant-call data storage and retrieval library using the TileDB storage library.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

C++ variant-calling related posts

  • [TileDB webinar] Population genomics is a data management problem

    3 projects | /r/bioinformatics | 20 Oct 2021

Index

What are some of the best open-source variant-calling projects in C++? This list will help you:

Project Stars
1 Vcflib 596
2 octopus 296
3 TileDB-VCF 80

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