COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets (by urmi-21)
cellSNP
Pileup biallelic SNPs from single-cell and bulk RNA-seq data (by single-cell-genetics)
| COVID-19-RNA-Seq-datasets | cellSNP | |
|---|---|---|
| 3 | 2 | |
| 75 | 69 | |
| - | - | |
| 3.8 | 0.0 | |
| about 2 years ago | almost 2 years ago | |
| Python | Python | |
| MIT License | Apache License 2.0 |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
COVID-19-RNA-Seq-datasets
Posts with mentions or reviews of COVID-19-RNA-Seq-datasets.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-10-30.
- What's so special about covid that it needs multiple vaccines and boosters and all these mandates and passports ?
-
Project ideas
Maybe you could present this with an explanation of each dataset? https://github.com/urmi-21/COVID-19-RNA-Seq-datasets
cellSNP
Posts with mentions or reviews of cellSNP.
We have used some of these posts to build our list of alternatives
and similar projects.
-
How to create VCFs for scRNA-Seq data sets
cellSNP is popular and works well.
-
Annotating variants in single-cell sequencing data
The authors of vireo have a tool called cellSNP that may be helpful as well.
What are some alternatives?
When comparing COVID-19-RNA-Seq-datasets and cellSNP you can also consider the following projects:
RNA-seq-analysis - RNAseq analysis notes from Ming Tang
Vcflib - C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
TPMCalculator - TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
cellsnp-lite - Efficient genotyping bi-allelic SNPs on single cells
covid-19 - Novel Coronavirus 2019 time series data on cases
covid-19-data - Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
scaredi-pi - Simple COVID-19 Ambient Reminder E-Ink Display for Pi