ViraMiner Alternatives

Similar projects and alternatives to ViraMiner

• metaGEM

  14 165 6.3 Python ViraMiner VS metaGEM

  :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

• DeePhage

  1 19 3.9 MATLAB ViraMiner VS DeePhage

  A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning

• WorkOS

  workos.com sponsored

  The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  

• PhaMers

  1 6 10.0 Python ViraMiner VS PhaMers

  A bioinformatic tool for identifying bacteriophages using machine learning and k-mers

• virnet

  1 29 0.0 Jupyter Notebook ViraMiner VS virnet

  VirNet: A deep attention model for viral reads identification

• MetaRon

  1 6 1.8 Python ViraMiner VS MetaRon

  Metagenomic opeRon Prediction pipeline. MetaRon presents the first pipeline for the prediction of metagenomic operons without any functional or experimental data.

• PPR-Meta

  1 34 1.8 MATLAB ViraMiner VS PPR-Meta

  A tool for identifying phages and plasmids from metagenomic fragments using deep learning

• virMine

  1 18 0.0 Python ViraMiner VS virMine

• InfluxDB

  www.influxdata.com sponsored

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• VirusSeeker-Virome

  1 16 10.0 Perl ViraMiner VS VirusSeeker-Virome

  VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial origin.

• RNN-VirSeeker

  1 8 0.0 Python ViraMiner VS RNN-VirSeeker

  This is a deep learning method for identification of viral contigs with short length from metagenomic data.

• Cenote_Unlimited_Breadsticks

  1 6 2.7 Shell ViraMiner VS Cenote_Unlimited_Breadsticks

  DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report