ViraMiner
VirusSeeker-Virome
| ViraMiner | VirusSeeker-Virome | |
|---|---|---|
| 1 | 1 | |
| 28 | 16 | |
| - | - | |
| 10.0 | 10.0 | |
| over 3 years ago | over 6 years ago | |
| Python | Perl | |
| - | GNU General Public License v3.0 only |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
ViraMiner
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Bad tools that NEED improvement
ViraMiner: bad documentation. Wasnt sure how to install or run it. Maybe it works? Never got that far.
VirusSeeker-Virome
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Bad tools that NEED improvement
VirusSeeker: no installation or running instructions on GitHub. They do have it on their lab website, but you have to edit source files to point to databases. Too much of a pain. So not sure how it works once that is done.
What are some alternatives?
metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
virMine
DeePhage - A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning
PhaMers - A bioinformatic tool for identifying bacteriophages using machine learning and k-mers
virnet - VirNet: A deep attention model for viral reads identification
MetaRon - Metagenomic opeRon Prediction pipeline. MetaRon presents the first pipeline for the prediction of metagenomic operons without any functional or experimental data.
PPR-Meta - A tool for identifying phages and plasmids from metagenomic fragments using deep learning