ViraMiner
MetaRon
| ViraMiner | MetaRon | |
|---|---|---|
| 1 | 1 | |
| 28 | 6 | |
| - | - | |
| 10.0 | 1.8 | |
| over 3 years ago | about 2 years ago | |
| Python | Python | |
| - | GNU General Public License v3.0 or later |
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ViraMiner
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Bad tools that NEED improvement
ViraMiner: bad documentation. Wasnt sure how to install or run it. Maybe it works? Never got that far.
MetaRon
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Bad tools that NEED improvement
MetaRon is a tool for metagenomic operon prediction that was published in BMC Genomics in 2020. As far as I can tell, no one has been able to get it to work, and the authors are unresponsive on GitHub. If I knew any python, I would take a crack at fixing it.
What are some alternatives?
metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
RNN-VirSeeker - This is a deep learning method for identification of viral contigs with short length from metagenomic data.
DeePhage - A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning
PhaMers - A bioinformatic tool for identifying bacteriophages using machine learning and k-mers
virnet - VirNet: A deep attention model for viral reads identification
VirusSeeker-Virome - VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial origin.