MetaRon Alternatives

Similar projects and alternatives to MetaRon

metaGEM

14 165 6.3 Python MetaRon VS metaGEM

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
RNN-VirSeeker

1 8 0.0 Python MetaRon VS RNN-VirSeeker

This is a deep learning method for identification of viral contigs with short length from metagenomic data.
InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
virnet

1 29 0.0 Jupyter Notebook MetaRon VS virnet

VirNet: A deep attention model for viral reads identification
ViraMiner

1 28 10.0 Python MetaRon VS ViraMiner

CNN based classifier for detecting viral sequences among metagenomic contigs
DeePhage

1 19 3.9 MATLAB MetaRon VS DeePhage

A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning
VirusSeeker-Virome

1 16 10.0 Perl MetaRon VS VirusSeeker-Virome

VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial origin.
PhaMers

1 6 10.0 Python MetaRon VS PhaMers

A bioinformatic tool for identifying bacteriophages using machine learning and k-mers
WorkOS

workos.com sponsored

The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
PPR-Meta

1 34 1.8 MATLAB MetaRon VS PPR-Meta

A tool for identifying phages and plasmids from metagenomic fragments using deep learning
virMine

1 18 0.0 Python MetaRon VS virMine
Cenote_Unlimited_Breadsticks

1 6 2.7 Shell MetaRon VS Cenote_Unlimited_Breadsticks

DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better MetaRon alternative or higher similarity.

Suggest an alternative to MetaRon

MetaRon reviews and mentions

Posts with mentions or reviews of MetaRon. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-12-18.

Bad tools that NEED improvement
11 projects | /r/bioinformatics | 18 Dec 2021

MetaRon is a tool for metagenomic operon prediction that was published in BMC Genomics in 2020. As far as I can tell, no one has been able to get it to work, and the authors are unresponsive on GitHub. If I knew any python, I would take a crack at fixing it.