virMine Alternatives

Similar projects and alternatives to virMine

metaGEM

14 165 6.3 Python virMine VS metaGEM

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
RNN-VirSeeker

1 8 0.0 Python virMine VS RNN-VirSeeker

This is a deep learning method for identification of viral contigs with short length from metagenomic data.
InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
VirusSeeker-Virome

1 16 10.0 Perl virMine VS VirusSeeker-Virome

VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial origin.
DeePhage

1 19 3.9 MATLAB virMine VS DeePhage

A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning
virnet

1 29 0.0 Jupyter Notebook virMine VS virnet

VirNet: A deep attention model for viral reads identification
PhaMers

1 6 10.0 Python virMine VS PhaMers

A bioinformatic tool for identifying bacteriophages using machine learning and k-mers
PPR-Meta

1 34 1.8 MATLAB virMine VS PPR-Meta

A tool for identifying phages and plasmids from metagenomic fragments using deep learning
WorkOS

workos.com sponsored

The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
ViraMiner

1 28 10.0 Python virMine VS ViraMiner

CNN based classifier for detecting viral sequences among metagenomic contigs
Cenote_Unlimited_Breadsticks

1 6 2.7 Shell virMine VS Cenote_Unlimited_Breadsticks

DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report
MetaRon

1 6 1.8 Python virMine VS MetaRon

Metagenomic opeRon Prediction pipeline. MetaRon presents the first pipeline for the prediction of metagenomic operons without any functional or experimental data.

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better virMine alternative or higher similarity.

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virMine reviews and mentions

Posts with mentions or reviews of virMine. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-12-18.

Bad tools that NEED improvement
11 projects | /r/bioinformatics | 18 Dec 2021

VirMine: docker container can't be built due to outdated and unavailable dependencies. Even with that resolved myself, they install a package that needs CLI input during container building which cannot be supplied so it gets stuck in a loop. Cannot be installed.