RNN-VirSeeker Alternatives

Similar projects and alternatives to RNN-VirSeeker

• metaGEM

  14 165 6.3 Python RNN-VirSeeker VS metaGEM

  :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

• PPR-Meta

  1 34 1.8 MATLAB RNN-VirSeeker VS PPR-Meta

  A tool for identifying phages and plasmids from metagenomic fragments using deep learning

• WorkOS

  workos.com sponsored

  The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  

• virMine

  1 18 0.0 Python RNN-VirSeeker VS virMine

• MetaRon

  1 6 1.8 Python RNN-VirSeeker VS MetaRon

  Metagenomic opeRon Prediction pipeline. MetaRon presents the first pipeline for the prediction of metagenomic operons without any functional or experimental data.

• DeePhage

  1 19 3.9 MATLAB RNN-VirSeeker VS DeePhage

  A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning

• PhaMers

  1 6 10.0 Python RNN-VirSeeker VS PhaMers

  A bioinformatic tool for identifying bacteriophages using machine learning and k-mers

• virnet

  1 29 0.0 Jupyter Notebook RNN-VirSeeker VS virnet

  VirNet: A deep attention model for viral reads identification

• InfluxDB

  www.influxdata.com sponsored

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• ViraMiner

  1 28 10.0 Python RNN-VirSeeker VS ViraMiner

  CNN based classifier for detecting viral sequences among metagenomic contigs

  

• VirusSeeker-Virome

  1 16 10.0 Perl RNN-VirSeeker VS VirusSeeker-Virome

  VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial origin.

• Cenote_Unlimited_Breadsticks

  1 6 2.7 Shell RNN-VirSeeker VS Cenote_Unlimited_Breadsticks

  DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report