RNN-VirSeeker VS VirusSeeker-Virome

Compare RNN-VirSeeker vs VirusSeeker-Virome and see what are their differences.

RNN-VirSeeker

This is a deep learning method for identification of viral contigs with short length from metagenomic data. (by crazyinter)
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VirusSeeker-Virome

VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial origin. (by guoyanzhao)
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RNN-VirSeeker VirusSeeker-Virome
1 1
8 16
- -
0.0 10.0
over 2 years ago over 6 years ago
Python Perl
- GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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RNN-VirSeeker

Posts with mentions or reviews of RNN-VirSeeker. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-12-18.
  • Bad tools that NEED improvement
    11 projects | /r/bioinformatics | 18 Dec 2021
    RNN-Virseeker: hard coded paths to training and actual data, so source code must be edited for it to be used. Bad practice and unscalable. Also, they don't follow Python conventions. test.py is generally meant to indicate a unit/integration test file for something like pytest, but in their "tool" that is the actual tool's file name.

VirusSeeker-Virome

Posts with mentions or reviews of VirusSeeker-Virome. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-12-18.
  • Bad tools that NEED improvement
    11 projects | /r/bioinformatics | 18 Dec 2021
    VirusSeeker: no installation or running instructions on GitHub. They do have it on their lab website, but you have to edit source files to point to databases. Too much of a pain. So not sure how it works once that is done.

What are some alternatives?

When comparing RNN-VirSeeker and VirusSeeker-Virome you can also consider the following projects:

PPR-Meta - A tool for identifying phages and plasmids from metagenomic fragments using deep learning

virMine

DeePhage - A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning

MetaRon - Metagenomic opeRon Prediction pipeline. MetaRon presents the first pipeline for the prediction of metagenomic operons without any functional or experimental data.

virnet - VirNet: A deep attention model for viral reads identification

PhaMers - A bioinformatic tool for identifying bacteriophages using machine learning and k-mers

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

RNN-VirSeeker vs PPR-Meta VirusSeeker-Virome vs virMine RNN-VirSeeker vs virMine VirusSeeker-Virome vs DeePhage RNN-VirSeeker vs MetaRon VirusSeeker-Virome vs virnet RNN-VirSeeker vs DeePhage VirusSeeker-Virome vs PhaMers RNN-VirSeeker vs PhaMers VirusSeeker-Virome vs PPR-Meta RNN-VirSeeker vs metaGEM VirusSeeker-Virome vs metaGEM