ViraMiner
virMine
ViraMiner | virMine | |
---|---|---|
1 | 1 | |
28 | 18 | |
- | - | |
10.0 | 0.0 | |
over 3 years ago | about 2 years ago | |
Python | Python | |
- | MIT License |
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ViraMiner
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Bad tools that NEED improvement
ViraMiner: bad documentation. Wasnt sure how to install or run it. Maybe it works? Never got that far.
virMine
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Bad tools that NEED improvement
VirMine: docker container can't be built due to outdated and unavailable dependencies. Even with that resolved myself, they install a package that needs CLI input during container building which cannot be supplied so it gets stuck in a loop. Cannot be installed.
What are some alternatives?
metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
VirusSeeker-Virome - VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial origin.
DeePhage - A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning
RNN-VirSeeker - This is a deep learning method for identification of viral contigs with short length from metagenomic data.
PhaMers - A bioinformatic tool for identifying bacteriophages using machine learning and k-mers
virnet - VirNet: A deep attention model for viral reads identification
MetaRon - Metagenomic opeRon Prediction pipeline. MetaRon presents the first pipeline for the prediction of metagenomic operons without any functional or experimental data.
PPR-Meta - A tool for identifying phages and plasmids from metagenomic fragments using deep learning