orfipy VS pyrodigal

Compare orfipy vs pyrodigal and see what are their differences.

orfipy

Fast and flexible ORF finder (by urmi-21)
Bioinformatics Protein Dna Python codon-tables extract-orfs orf-detection orf-search orf-finder
Source Code
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pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD! (by althonos)
orf-finder metagenomes Python bioconda python-library cython-wrapper python-interface prodigal Genome gene-finding Bioinformatics Simd
Source Code
pyrodigal.readthedocs.org
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orfipy pyrodigal
2 1
46 122
- -
1.8 8.7
over 2 years ago 12 days ago
Python Cython
MIT License GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

orfipy

Posts with mentions or reviews of orfipy. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-08.

pyrodigal

Posts with mentions or reviews of pyrodigal. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-19.

What are some alternatives?

When comparing orfipy and pyrodigal you can also consider the following projects:

galaxy - Data intensive science for everyone.

Prodigal - Prodigal Gene Prediction Software

Biopython - Official git repository for Biopython (originally converted from CVS)

cyvcf2 - cython + htslib == fast VCF and BCF processing

reCOGnizer - A tool for domain based annotation with databases from the Conserved Domains Database

MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report.

DNA-to-Protein-sequence - Translate a string containing a nucleotide sequence(DNA) into a string containing the corresponding sequence of amino acids.

pybase64 - Fast Base64 encoding/decoding in Python

DNA-to-Amino-Acid-Converter - This program breaks apart a DNA string and dispalys each amino acid associated with each codon

masurca

orfipy vs galaxy pyrodigal vs Prodigal orfipy vs Biopython pyrodigal vs cyvcf2 orfipy vs reCOGnizer pyrodigal vs MultiQC pyrodigal vs DNA-to-Protein-sequence pyrodigal vs pybase64 pyrodigal vs DNA-to-Amino-Acid-Converter pyrodigal vs masurca