Top 8 Python Protein Projects

Biopython

31 4,158 9.6 Python

Official git repository for Biopython (originally converted from CVS)

Project mention: Invitación a proyecto - Biopython en Español | /r/devsarg | 2023-07-23

MolecularNodes

2 785 9.8 Python

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

Project mention: Rendering protein structures inside cells at the atomic level with Unreal Engine | news.ycombinator.com | 2024-02-29

InfluxDB

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progen

6 558 0.0 Python

Official release of the ProGen models

Project mention: Large language models generate functional protein sequences across families | news.ycombinator.com | 2023-05-13

I was supposed to be reply to another comment. The GitHub is from 2022:
https://github.com/salesforce/progen

pyfaidx

1 440 6.0 Python

Efficient pythonic random access to fasta subsequences
deepblast

2 96 4.8 Python

Neural Networks for Protein Sequence Alignment

Project mention: [D] To all the machine learning engineers: most difficult model task/type you’ve ever had to work with? | /r/MachineLearning | 2023-07-03

orfipy

2 46 1.8 Python

Fast and flexible ORF finder
ProteinStructurePrediction

1 9 0.0 Python

Protein structure prediction is the task of predicting the 3-dimensional structure (shape) of a protein given its amino acid sequence and any available supporting information. In this section, we will Install and inspect sidechainnet, a dataset with tools for predicting and inspecting protein structures, complete two simplified implementations of Attention based Networks for predicting protein angles from amino acid sequences, and visualize our predictions along the way.
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protein_physicochemical_properties_calculator

2 2 0.0 Python

ProtParam based program that outputs the id, pI, charge and molecular weight of each protein

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python Protein related posts

Rendering protein structures inside cells at the atomic level with Unreal Engine
2 projects | news.ycombinator.com | 29 Feb 2024
Large language models generate functional protein sequences across families
3 projects | news.ycombinator.com | 13 May 2023
What is a recent scientific discovery that you find exciting?
2 projects | /r/AskScienceDiscussion | 7 May 2023
Is there a way to achieve a similar COG annotation for Haloferax mediterranei?
1 project | /r/bioinformatics | 10 Apr 2023
Is there a way to achieve a similar COG annotation for Haloferax mediterranei?
1 project | /r/proteomics | 10 Apr 2023
[R] Large language models generate functional protein sequences across diverse families
1 project | /r/MachineLearning | 26 Feb 2023
Salesforce/progen: projects and models for protein engineering and design
1 project | news.ycombinator.com | 29 Jan 2023
A note from our sponsor - WorkOS
workos.com | 25 Apr 2024

The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning. Learn more →

Index

What are some of the best open-source Protein projects in Python? This list will help you:

	Project	Stars
1	Biopython	4,158
2	MolecularNodes	785
3	progen	558
4	pyfaidx	440
5	deepblast	96
6	orfipy	46
7	ProteinStructurePrediction	9
8	protein_physicochemical_properties_calculator	2