Cython Bioinformatics

Open-source Cython projects categorized as Bioinformatics
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Topics: Cython Simd python-library Vcf Python
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Cython Bioinformatic Projects

  • cyvcf2

    cython + htslib == fast VCF and BCF processing

  • pyrodigal

    Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

    • Project mention: DNA to amino acid sequence? | /r/bioinformatics | 2023-06-19

    True! I believe bakta relies on this python implementation of prodigal for translation https://github.com/althonos/pyrodigal

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Index

Project Stars
1 cyvcf2 357
2 pyrodigal 122

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