pyrodigal VS cyvcf2

Compare pyrodigal vs cyvcf2 and see what are their differences.

pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD! (by althonos)
orf-finder metagenomes Python bioconda python-library cython-wrapper python-interface prodigal Genome gene-finding Bioinformatics Simd
Source Code
pyrodigal.readthedocs.org
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cyvcf2

cython + htslib == fast VCF and BCF processing (by brentp)
Vcf Htslib Cython Genomics Bioinformatics
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pyrodigal cyvcf2
1 1
122 358
- -
8.7 7.7
9 days ago 3 months ago
Cython Cython
GNU General Public License v3.0 only MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

pyrodigal

Posts with mentions or reviews of pyrodigal. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-19.

cyvcf2

Posts with mentions or reviews of cyvcf2. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing pyrodigal and cyvcf2 you can also consider the following projects:

Prodigal - Prodigal Gene Prediction Software

htslib - C library for high-throughput sequencing data formats

MultiQC - Aggregate results from bioinformatics analyses across many samples into a single report.

chatnoir-resiliparse - A robust web archive analytics toolkit

orfipy - Fast and flexible ORF finder

truvari - Structural variant toolkit for VCFs

DNA-to-Protein-sequence - Translate a string containing a nucleotide sequence(DNA) into a string containing the corresponding sequence of amino acids.

hts.cr - HTSlib bindings for Crystal

pybase64 - Fast Base64 encoding/decoding in Python

ruby-htslib - HTSlib bindings for Ruby

DNA-to-Amino-Acid-Converter - This program breaks apart a DNA string and dispalys each amino acid associated with each codon

Hail - Cloud-native genomic dataframes and batch computing

pyrodigal vs Prodigal cyvcf2 vs htslib pyrodigal vs MultiQC cyvcf2 vs chatnoir-resiliparse pyrodigal vs orfipy cyvcf2 vs truvari pyrodigal vs DNA-to-Protein-sequence cyvcf2 vs hts.cr pyrodigal vs pybase64 cyvcf2 vs ruby-htslib pyrodigal vs DNA-to-Amino-Acid-Converter cyvcf2 vs Hail